WebChimeraX provides a command that calculates the molecular lipophilicity potential (MLP) map for proteins. ... Command: color byattribute bfactor palette rainbow range 25,75. B-factor is an atom attribute, but residue and model attributes can also be used for coloring. WebFitting an atomic model in an electron microscopy map with ChimeraX UCSF ChimeraX 1.32K subscribers 4.4K views 1 year ago SAN FRANCISCO I show how to make an atomic model of a nanocage by...
ChimeraX Tutorial: Using the command-line to create
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Webhelp– show command help in the ChimeraX browser hkcage– create a cage of hexagons and pentagons to represent an icosahedral virus capsid info– report model and other information to the user or to other programs interfaces– draw chain-chain network … ChimeraX Quick Start Guide UCSF ChimeraX is the next-generation … Command-Line Target Specification. Most commands require or allow specifying … Automatically set surface or mesh threshold level to enclose the specified volume in … WebOct 1, 2024 · name = str: the name for the new mesh isosurface object. map = str: the name of the map object to use for computing the mesh. level = float: the contour level (in sigma units) {default: 1.0} selection = str: an … WebChimeraX window showing interchain H-bonds and length histogram (PDBid: 2ptt ). The “crosslinks” command and resulting histogram were originally developed to analyze crosslinks, but may be used on any pseudobonds, including the H-bonds shown here. rich hill movie cast